PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS28510 (492 amino acids)

SeqID: BPHYT_RS28510 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61252084: Polyol:NADP oxidoreductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS28510
MRLSNAALASLAARAAGKVVVPAYDRASLAPGIVHLGLGAFHRAHQALYTEHALRAGDHR
WGIVGVSLRRADTSEALTAQDHLYAVDVRDGTADSLQVIGALIASLVAPQSPAAVLDAMT
DPRCHIVSLTITEKGYCRNPASGALQFDHPDIAHDLRAAAAPRSAIGFVVRALALRRAAG
LGPFTVLSCDNLPSNGDTMRALTLAFARETDPALADWIELEAAFPNTMVDRIVPLTTDAD
RLRVAKQLGADDAWPVITEPFSQWVIEDRFAGPRPAWERAGATLVGDARPYEQAKLRMLN
GAHSALAYLGSLIGYDTVDQAIGAPAVLNFVESMLRDEVEPTLSRPALATYRAELFARFR
NTALDHRLQQIATDGSQKLPQRWLESVRANLKSGAPTERLAFALAGWIAYLGGHDETGRT
YAIADPLADRLTEAVRATLHADAADAVRTLFEIEPIFGRDLCAHPRFVAQVARHLAAIRA
QGVVKAMDAFAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory