PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS29250 (307 amino acids)

SeqID: BPHYT_RS29250 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 66774113: Dihydrodipicolinate synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS29250
MSIFSGIWVPLITPFADGAVDHAALRALVRRYTGAGIAGLVALGTTGEPAALDAAEQDAV
LATILDEAQSAAHLARDGQALPVVAGVSGNHTASMRVRIGQLNALPLAGVLMAAPYYIRP
SQAGIVAHFMALADASEKPVVLYDIPYRTGVRLELDTLLALATHPRIQAVKDCAGSLDTT
LALIRDARLQVLAGEDINIFNTLCLGGSGAIAASAHVRPERFVEMYRALAAGRLADGRRI
FHALAPLIEALFVEPNPAPVKALLAAQGLIRDELRMPMTRASGALIERLEGLAERERSEP
QETEVMV