PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS29290 (441 amino acids)

SeqID: BPHYT_RS29290 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600502: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS29290
MSPPLTHIQTSPTLPAAADVVVIGGGIIGVFAAYYMAQRGVSVALVEKGRIGAEQSSRNW
GWCRQQNRDERELPIASKSLDLWERFAVESGEDTGFHRCGLLYLSNDDAELARWASWGDF
AKTAGVTTYLLDSKQAAERGKATGRAWKGGVFSPSDGTADPAKAAPAVATALMKLGGSVT
QQCAARGIELEGGRVCGVVTEAGVIKTRTVVLAGGAWASAFCRQLGIRFPQASIRQSILS
VSPVETPLPDALFTSGVSITRRTDGRYALAISGRARVDVTPQFLRFAPQFVPMFAKRWRN
LLPGGLEGVRGGHETLKRWQLDAPTPMERVRILDPKPDMPTVRETHRRAIELLPELGKAK
ITHAWAGFVDSTPDGVPGIGEVPGVPGLILAAGFSGHGFGIGPGAGHLIADLATGAAPIV
DPIPYRPARFADSAWGKVADF