PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS31920 (650 amino acids)

SeqID: BPHYT_RS31920 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS31920
MPSQPDPVWWPTATDVSNAQVTSLIRALGLRDYDELYAYSIANPGEYWHRLMVWLGIRWQ
APYSAYVDLSDGKPFPQWFPGGKLNWVDSIFECEADKERLQRIALIAEDESGRVTQRTYA
ELREDVQSFAAGLMTSKLGPGDCVGLLMESSVESVVTYLALSYIGAIAVPLFSGFGADAI
VARLQGCDAKGLVATAGFMRRGKPVLTRDAIESSIPALPSLEVLVVKPMRGSQGSVHAGA
LDWYDVLAAGRAEPLDHAVPAEANTPCMIVYTSGTTGKPKGTVHTHGGFPLKIAHDAAVY
FNLGAGDRWLWPADMGWVAGPITIAGAFLRGATLVCYDGAPNCPDWSRLPQLIRRYAVTH
FGASPTLIRTLSAHESSIAPDDLSSVRLAITAGEVIDSESFRWYGERFACPVINFTGGSE
VSGGLLGNVVVKPIVPGGFNAIAPGIRVDVRGADGKQVRGEVGELAVLEPFVGMTRSFWK
NPERYLDTYWRNVPDVWIHGDLAIQFDDHAFVLCGRSDDTLKIAGKRVGPSEIEDVIVEI
AEVAEAAAVGISDPVKGQRLVVFVVADKERCTVAFREQIVDMVSRRLGKPFAPSQVYVVG
ELPKTRSGKIMRRLIKRAYEGQPLGDTASLENPWAIEMIREVMKLPIEPA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory