PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS32285 (396 amino acids)

SeqID: BPHYT_RS32285 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141944: Aromatic-amino-acid aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS32285
MFAHVQPYAGDPILGLMETFAKDANPKKVNLGVGIYYDEDGRIPVLHSVRQAAASVTANG
APATYLPIEGDATYRSQVASLLFGEASPSVFQSLATVQTIGGSGALKVGADFLKVHFPES
VVYVSNPTWDNHFGIFEGAGFSVAAYRYYDPATKGLDFDGLLLDLEQTKAKDIVLLHACC
HNPTGVDPSRAQWTTILDLIEKRGLIPFVDAAYQGFGDGLNEDAFVIRELARRGLNFLVS
NSFSKNFSLYGERCGTLLVHCAVETERDNVLGRVKLAVRRNYSSPPTHGMRLVSTVLGDA
SLRAEWTSELEAIRSRIVQMRQRLHVSLTEALPSRNFDYIVEQKGMFAYTGLSEKQVFAL
RADYGIYAVSSGRICIAGLNAGNVEYVARGLVELMR