PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS32650 (499 amino acids)

SeqID: BPHYT_RS32650 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS32650
MDASTILADLGIAHAAQAGDIAVHSPITGDLIGRVASNTVAEVDTALARAKEAYTAWRNV
PAPRRGELVRLLGNRLREKKQALGSIITLETGKILQEGLGEVQEMIDICDFAVGLSRQLY
GLTIASERPGHRMAETWHPMGTCVVISAFNFPAAVWSWNAALALVCGNAVIWKPSEKTPL
TALAVNQILTEALQEFGDAPAGLTALINGGRDVGAKLVADPRASIVSATGSTEMGRTVGV
EVAKRFGRSLLELGGNNAGIVTQTADHELAMRGILFSAVGTAGQRCTSLRRLFVHESVYD
KTIERLKQLYSKVPIGNPLEKGTLMGPLIDKQSYGRMQEALQQATAEGGKVFGGERVDVK
GYENGYYVRPAIVEMPSQTSVVLKETFAPILYVLRYTDFADAVEANNAAVHGLSSCVFTT
DLREAERFLSDSGSDCGIANVNIGPSGAEIGGAFGGEKETGGGRESGSDAWKAYMRRATN
TVNYSSALPLAQGIDFNIG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory