PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS32820 (342 amino acids)

SeqID: BPHYT_RS32820 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586265: D-xylose-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS32820
MKFATRRTVLSSLVCGAVLASLSLVAPLAHASKDHPEIGFCIDDLRVERWSRDRDYFVAA
AEKLGAKVSVQSADASEARQISQIENLISRGVDVIVIVPFNSKTLGNVVAEAKKAGIKVV
SYDRLILDADVDAYISFDNEKVGELQAQGVYNAQPKGNYFLLGGAPTDNNAKMLREGQLK
ILKPAIDKGDIKVVGQQWVPEWSASTALRIVEDALTANNNKIDAIVASNDGTAGGAIQAL
AAQHMAGKVPVSGQDADLAAVKRVIAGTQTMTVYKPLKLIAGEAAKLSVALAKGEKPAFN
SQYDNGKKKVDTVLLQPTLLTKSNVDVVVKDGFYSQAQLASQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory