PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS33230 (486 amino acids)

SeqID: BPHYT_RS33230 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2495533: Inner membrane transport protein ybaT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS33230
MADTSYMARKSVADIVGSADADEGHSLSKSLGAISITAMGIGAIIGAGIFVLTGTAAAQF
AGPSIVLSFVLGGIACAFVGLCYSELAAMLPVCGSSYTYTYATLGEIFAWIIGWDLILEY
AMGAATVAVGWSGYIVSLLHNVGISIPPVLATAPGTVIKLADGTTATGIVNLPAIVIIAI
LTTMLVLGTKESARLNNIMVAVKLVVVVAFIALGVFFIKPANWHPFIPANTGEFGNFGMS
GILRGSAVVFFAFIGFDAVSTAAQEAKKPQRDMPIGILGSLIICTILYILVAGVLTGLVP
YAELNVPDPIAKGVDAIGLNWFSILIKIGALTGLTTVILVLLYGQSRIFFTMSTDGLLPP
LFARVHPRLQTPYLSQILIGSVVAIVAALTPISVLGEMVSIGTLFAFILVCGAVIYLRRS
DSDASRPFRVPGVPVVPVLGILFCLLLMAGLPLVTWVRLVVWLVIGMTIYMSYGRNHSRL
RYPERH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory