PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS33295 (362 amino acids)

SeqID: BPHYT_RS33295 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 731052: sn-glycerol-3-phosphate transport ATP-binding protein ugpC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS33295
MARIEFQNLAHAYAPNPATLDDYALQPMSMVWEDGGAYALLGPSGCGKSTLLNIVSGLVT
PSEGKVLFDGSDITAKSPRERNIAQVFQFPVIYDTMSVFDNLAFPLRNRKMSAHDVKQRV
HEVAEILDMTRELPRKANNLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWILR
RQLKKIHQQLKLTLIYVTHDQVEALTFADEVVVMTNGRVVQKGDPGALFLRPDHAFVGYF
IGSPGMNLCPIELNADGIKIGTQHLQLDPPTLETLRHANGTLTLGIRPEFVRVASDGEAG
AVKAHLLRVQQLGNYQLVTAQCDGHVFRAKVEPHLRVGEGAVWLKLATAETVFFSNDERI
TR