PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS33775 (1154 amino acids)

SeqID: BPHYT_RS33775 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 17367880: "Oligo-1,6-glucosidase"]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS33775
MKRDDPAETTTQSPVGNAPGNTAKPRTNRRGKPAALSDDPLWYKDAIIYQVHIKSFFDAN
NDGVGDFPGLIAKLDYIAELGVNAIWLLPFYPSPRRDDGYDIADYRNVHPDYGNLSDVKR
FIQEAHARGIRVITELVINHTSDQHPWFQRARRAKPGSNHRNYYVWSDTDQKYQETRIIF
IDSEPSNWTHDPVAGAYYWHRFYSHQPDLNFDNPAVLKEVLQVMRFWLDMGIDGLRLDAV
PYLVEREGTNNENLPETHAVLKKIRATIDAEYPNRMLLAEANQWPEDVKEYFGDEDECHM
AFHFPLMPRIYMSIASEDRFPITDIMRQTPDLAATNQWAIFLRNHDELTLEMVTDSERDY
LWNTYASDRRARLNLGIRRRLAPLMERDRRRIELINSLLLSMPGTPVIYYGDELGMGDNI
HLGDRDGVRTPMQWSSDRNGGFSRADPEQLVLPPVMGSLYGFDAVNVEAQSRDPHSLLNW
TRRMLATRRAKQTFGRGTIRFLKPENRKILAYLREMPGEPPILCVANLSRAPQAVELDLS
EFNGSVPIEMTADSVFPAIGQLTYLLTFPPYGFLWFMLCPGGQRPTWAQAHSESLPEFVT
IVIREGQVGPTPENVRLLESEVLPSWLSRRRWFASKDQKLNAVRLAALTTIPHGGFAFTE
IEADVGGHTERYVVPIAITWGGETTFPLFKQLAFARVRRGRNVGHLTDAFALPIFAHGVM
RKLRERAVVPTVQKSEIKFLPTERFAELEGLGERPEIRWLAAEQSNSSLIIADTVVLKLV
RRLVSGIHPEAEISRYLTQLGYANTAPLYGEVVRVDPEGVPHTLCILQGYIENQGDAWNW
SLDYLRRSVDELAIAVDTEAQSAPDRTNEAILLEGYSSLAGTIGRRLGELHVALASPTDD
PAFAPEPASAEQVKAWVDGTQAMLASALDLLAPRIEQMSDPETKALAQSLIDRRKELVAA
VDNLVSADAGALRIRIHGDFHLGQVLVAQGDAFLIDFEGEPARSLEERRQKSSPLRDVAG
LMRSLSYASAAAQSTTEAAPQQTADRKRALFDRFRAHATETFLSEYRAAAAEAATPLVAP
EAEQALLDLFLIEKAAYEIRYEAANRPTWLSLPVRGLAALTSRLLGDTGAPGHDSPTQAP
GAATPPNPAEGDYE