PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS35150 (331 amino acids)

SeqID: BPHYT_RS35150 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599630: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS35150
MQYRKFGRTGLTVSRLCLGTMTFGLQTEEDASHRILDTAADAGVNFIDTANVYPLGGTEN
LAGRTEEIVGQWLKGKRERFILATKAVGKMGPSAWDQGASRKHLLDAIDASLQRLGTDYV
DLYQLHSDDANTPLDETLEALDVIVRSGKARYIGVSNFLAYRLARALGRADVLRVARFVS
VQPRYNLLFRQIERELLPLAAEEQLAVMPYNPLAGGLLTGKHQLDSAPTSGRFTETVGKA
GAMYQQRYWHKREFETIEQLKTIVAPTGESLTRVSLAWVLANPLVTSAIIGASRVEQLSD
TLAASELVLDEQIKTQLDEASVEYRWGDAAR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory