PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS35760 (341 amino acids)

SeqID: BPHYT_RS35760 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS35760
MTNLARRTLLRAAAAVPVAGALGFPAIVRAASGPEFVFKYGNNLPLTHPLNVRSQEAANQ
IKEASKGRMEIRIFPNNQLGGDTDMLAQVRSGGIEMFTPSALVVSTLAPSVAINAVGFAF
SDYNQVWGAMDGKLGAYVRAAMQKAGLESFEKMWDNGFRQTTTSNGPITSAQTMRGLKIR
VPVSPLSIDMFKGLGASPTSLQFSEVYSSLQTHIVDAQENPLPIVQVAKLYEVQKYCSLT
NHMWDGYWFVLNPRAWQRLPKDLQGIASDAFNQSALKQREDVRKLNDAAVADLQSKGLSI
NRPTPDTFRAALRQAGFYAEWKSKFGNQAWDLLEQSVGKLA