PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS02795 (318 amino acids)

SeqID: BWI76_RS02795 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 732294: ABC transporter periplasmic-binding protein ytfQ precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS02795
MWKRLLLVTAVSAAMSSMVMAAPLTVGFSQVGSESGWRAAETNVAKEEAAKRGITLKIAD
AQQKQENQIKAVRSFIAQGVDAIFIAPVVATGWEPVLKEAKEAKIPVFLLDRSIDVKDKD
LYMTTVTANNVLEGQLIGKWLVKTVDGKPCNVVELQGTVGASVAIDRKKGFAEAISKASN
IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK
DILTGSIDGVPDIYKAMMAGEANASVELTPNMAGPAFDALEKYKKDGTLPEKVTITKSTL
YLPDTAKEELEKKKNMGY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory