PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS03010 (334 amino acids)

SeqID: BWI76_RS03010 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506960: Ornithine carbamoyltransferase chain F]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS03010
MSAFYQKHFLKLLDFTPAEITALLELAARLKADKKNNIEIQHLTGKNIALIFEKDSTRTR
CSFEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEY
AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNQMTLVYAGDARNNMGNSMLEAAALT
GLDLRLVAPTACWPEEKLVEQCRALAQKNGGNITLTEDIAAGVKGADFIYTDVWVSMGEA
KEKWAERIALLRAYQVNSEMMALTGNPQVKFLHCLPAFHDDQTTLGKQMAAEYGLHGGME
VTDEVFESAASIVFDQAENRMHTIKAVMVATLGK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory