PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS04375 (477 amino acids)

SeqID: BWI76_RS04375 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [15 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2499537: Inner membrane protein ybhI]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS04375
MQKNKLWKLLVIIAIPLLISLFPAPEGLSKLAWVLSGIYLAAIVGLVIKPFAEPVVLLIA
VAASMVVVGNLGDGSIKAASVLSGYSSGTTWLVFSAFTLSAAFVITGLGKRIAYILIGKI
GSTTLGLGYVTAFLDLILAPATPSNTARAGGIVLPIINSVAVALGSEPERSAKRVGHYLM
LNVYMVTKTTSYMFFTAMAGNILALKMIEDICHIKLSWGGWALAAGLPGIIMLLLTPLIT
YKLYPPELKKVDNKKIAKAGMEALGPMTLREKMLSCLFVLALGGWVFSQSLGVNESTVAI
GVMALMLVLRIVTWDDVIKNKGGWNTLIWYGGIIGLSSLLSKVGFFLWLADLLKNNISFN
GHGNVAFIVIVALSILVRYFFASGSAYIVAMVPVFAMLANVSGAPVMLTALALLFSNSYG
GMVTHYGGAAGPVIFGVGYNDIKSWWIIGGILALLTFLLQITLGVWWWEILIAWKVI