PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS04450 (508 amino acids)

SeqID: BWI76_RS04450 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1168951: Citrate lyase alpha chain]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS04450
MKETVAMLNQQYVMPEGLAPYAGVTAKSPWLASESEKRQRKICASLEEAIRRSGLQNGMT
ISFHHAFRGGDKVVNMVVAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVIRQIYTSGL
RGKLGEEISAGLMENPVQIHSHGGRAYLVQSGELNIDVAFLGVPCCDEYGNANGFSGKSR
CGSLGYAKVDADAAKCVVLLTEEWVDYPNYPASIAQDQVDLIVQVDEVGDPAKITAGAIR
LTSNPRELLIARQAAKVIEHSGYFKDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGL
GGITGTMVDLHEKGLIKALLDTQSFDGDAARSLANNPNHIEISANQYANPGSKGIACERL
NVVMLSALEIDTGFNVNVMTGSNGVLRGASGGHCDTAAGADLTIITAPLVRGRIPCVVEK
VLTRVTPGASVDVLVTDHGIAVNPARQDLIDRLRQADIPLMTIEALQQRAELLTGKPEPI
AFTDRVVAVVRYRDGSVIDVIHQVKSAG