PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS06435 (454 amino acids)

SeqID: BWI76_RS06435 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6686326: Putative 3-hydroxyphenylpropionic acid transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS06435
MTQTQRLDVRELINANPLSRFQKLVVLLGFCVIALDGFDIAIMGFIAPTLKQEWGVSNHE
LGFVISAALIGLALGAIFSGPLADWLGRKKIIINSVFFFGFWTIATALSQNIEQMMVFRF
LTGLGLGAAMPNIGTLVSEYAPERQRSFLITIIFCGFTFGAAAGGFSASWLIPQFGWHSL
MLLGGILPLLFAPVLIWLLPESVRFLVVKRAPAERIRRILQRLYPGQIPDEAEFSLPTQP
VQANAMRIVLSRQYRFGSMMLWLVYFMGLFLVYLLGSWLPTLVKEVGLTVSQAAVMTAMY
QAGGTLGSLFAGWLMDRINPHRALGLIYAVGGLFTMAMGYAAASFALICLLAFISGACLN
GANTGMNALSARYYPTEARATGSSWMHGVGRLGAILSAFAGAEMLALNISFESVFLILGI
PAAITVAGLAAKGVFAADPEPKPTASTAPVRSTF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory