PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07580 (213 amino acids)

SeqID: BWI76_RS07580 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027924: Inner membrane amino-acid ABC transporter permease protein yecS]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07580
MDAISWQLLIEGAWTTLWISAIAIAFGVAIGLLIALVRMLRIPVIDQLLVVYISLARATP
LVTLVLFLFLSLPTVGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVG
MRRWAYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPL
SPILAAGLLYVVIIGLLLKLQGMAERKAKRLAR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory