PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07610 (554 amino acids)

SeqID: BWI76_RS07610 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114919: Choline dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07610
MQFDYIIIGAGSAGNVLATRLTEDPDTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRY
NWAYETEPEPHMNHRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWASAPGLEHWSYLD
CLPYYRKAETRDIGANDYHGGDGPVSVTTPKQGNNPLFHAMIEAGVQAGYPRTDDLNGYQ
QEGFGPMDRTVTPQGRRASTARGYLDQARARPNLTIRTHALTDHIIFAGKRAVGVEWLEG
DSTAPSKATANKEVLLCAGAIASPQILQRSGVGSPELLRQFDISLVHALPGVGENLQDHL
EMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSREAFAWPNI
QYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRLKSRDPHQHPAILFNYMSHEQD
WQEFRDAIRITREIMSQPALDNYRGREISPGIECQSDAELDEFVRNHAETAFHPCGTCKM
GYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKMADAIRGRQPLPKS
TAAYYVANGAPVRR