PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS07670 (506 amino acids)

SeqID: BWI76_RS07670 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS07670
MQATRKEFIIALDEGTTNAKAVVLDSRGQVVVKFSQPLAIQTPREGWVEQSGEVLVDASL
EVIAKAVAHVGAENVAALAISNQRETAIGWYRQSGKPINAAITWQCSRSAAFCDELRHSD
KEQQIKAVTGLPIAPLFSASKMRWLLESLPEGRALAERGEICLGTIDSWLLWNLTQGDAF
SCDYSNAARTQLLNLQTGQWDDDMLALFQIPRAALPEIKPSSGLFGYTRGLNAIPDGIPV
MAMVGDSHAALFGHALGELGCVKATYGTGSSVMAPVKSAQCDIDALATTIAWHDGDSITY
GLEGNIPHTGDAVAWMADSTGLSELSDAELAHELNTLPASVDSTLGVYFVPALTGLGAPW
WDDSARGVICGLSRGVKRAHLIRAALESITYQIADVVVAMRQQDDFHLTALMVDGGPTKN
DWLMQYQADLLGCPVMRSDVAELSAIGAALLARKALNPGSVTDLKAFLTEHSEFIPDMAR
HQRLQKRWQEWRHAVNRTLWKPATSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory