PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS08620 (348 amino acids)

SeqID: BWI76_RS08620 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS08620
MSVFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQSLPAHDPDCFLCPGNTR
VTGDKNPNYTGTFVFTNDFAALMTDTPDAPESDDPLMRCQSARGTSRVICFSPDHSKTLP
ELSVEALEGVVKTWQEQTADLGKTYPWVQVFENKGAAMGCSNPHPHGQVWANSFLPNEAE
REDRLQKAYFTEHGAPMLVDYAQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAH
VQRLTDLTDDQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNDEENNHWQLHAHFY
PPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDVHFRESGV