PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS08735 (562 amino acids)

SeqID: BWI76_RS08735 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 123765: Urocanate hydratase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS08735
MSQSKYRQQDVRAPRGTTLNAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARN
WECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNEL
DAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGA
QPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGRAISIALC
GNAADIVPEMVKRGVRPDMVTDQTSAHDPLHGYLPKGWNWEEYQAKAESDPRGTILAAKR
SMADHVQAMLAFHDMGVPTFDYGNNIRQMAQEMGVDNAFAFPGFVPAYIRPLFCRGIGPF
RWVALSGDPQDIYKTDAKVKEIVKDDKHLHHWLDMARERISFQGLPARICWVGLEWRQKL
GLAFNEMVRSGELSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTAS
GATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYDIA
IECATEQGLNLPMVAATQGHAK