PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS09735 (760 amino acids)

SeqID: BWI76_RS09735 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129879: Formate acetyltransferase 1]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS09735
MSELNEKLATAWEGFAKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATDATTKLWDTVME
GVKQENRTHAPVDFDTSLASTITSHDAGYIEKGLEKIVGLQTEAPLKRAIIPFGGIKMVE
GSCKAYDRELDPMLKKIFTEYRKTHNQGVFDVYTKDILNCRKSGVLTGLPDAYGRGRIIG
DYRRVALYGIDFLMKDKYAQFVSLQEKLENGEDLEATIRLREEISEQHRALGQIKEMAAK
YGCDISGPATTAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSSFLDIFIERDLKAGKITEQ
DAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGVDGRTLVTKNSFRFLNT
LYTMGPSPEPNITILWSEKLPLSFKKYAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC
VSPMVVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNFDEVMERM
DHFMDWLAKQYVTALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI
KYAKVKPIRDENGLAVDFEIEGEYPQFGNNDSRVDDMAVDLVERFMKKIQKLHTYRNAIP
TQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYA
KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAM
ENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM