PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS10690 (426 amino acids)

SeqID: BWI76_RS10690 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS10690
MSEHTTSYYAASANRYEPFPTLGESISCDVCVVGGGYTGLSSALHLAEMGYDVVLLEGAR
IGFGASGRNGGQLVNSYSRDIDVIEKTYGPDAAKMLGSMMFEGGDIIRERIQRYQIQCDY
RPGGLFVALNHKQLETLEEQKANWERYGNTQLELLDASAIRREVDSDRYAGALLDHSGGH
IHPLNLAIGEADAIRLNGGRVYEQSPVTRIQHSSPAVVTTERGQVTARYVIVAGNAYLGD
KLEPELAKRSMPCGTQVVATAPLAEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGG
GVVYGARDPDDVERLIMPKLLKTFPQLQGVKIDYRWTGNFLLTLSRMPQFGRLDNNIYYM
QGYSGHGVTCTHLAGRLISELLRGDAERFDAFAKLPHYPFPGGRSLRIPFTAMGAAYYSL
RDRLGV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory