PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS11375 (332 amino acids)

SeqID: BWI76_RS11375 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 729473: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS11375
MKLFHRARFIWGLPLLALTGLFWLSLFCYSPIPISPLNALHALLAPDTPALAEALVLNLR
LPRSLVAIMLGASLAMSGALLQTLTHNPLASPSLLGINSGAALAIALTSAFSPAPLAGFS
LALIAACGGGLSWLLVMTAGGGWRQQLDRHRLILAGIALSALCMALSRMTLLLAEDRAWG
ILTWLAGGVSHVRWAEFWQLFPFFALIAPGVFLLANALNLLNVGDTAAHSLGVNLPRLRL
LINAAVLLLTGASVSVAGPVAFIGLLVPHLARFCAGHDHRFLLPMSAVLGALLMLLADIL
ARALAWPGELPAGAVLALVGAPCFVWLVRRRG