PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS11380 (300 amino acids)

SeqID: BWI76_RS11380 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 33112656: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS11380
MFSLVRLCIFSLLFLAGPVFAVTVQDEHGRFTLDKTPQRIVVLELSFVDALAAVNVSPIG
VADDNDPSRILSDVRACLKPWQSVGTRAQPSLEAISALHPDLIVADSSRHAGIYAALRQI
APVLLLKSRNETWEENLQSAAIIGKVVGQDEEMQRRLAQHRQKMAAFSRQLPAGASVLFG
TSREQQFNLHSSQTYTGSVLAALGLKVPLPNGGAPMAAINLEQLLALNPQWLLVAHYRAE
SIVTKWQQDALWPILQAEQKQQVAAVDSDSWARMRGIVAAERIASDMVKIVHHQAVDIAP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory