PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS11685 (441 amino acids)

SeqID: BWI76_RS11685 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596096: succinylarginine dihydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS11685
MKAWEVNFDGLPGLTHHYAGLSFGNEASTKHRYRVSNPQLAAKQGLKKMKALADAGYPQA
LIPPQERPNIPLLRQIGFDGSDEQVLEKAARQAPELLSAASSASSMWVANAATVSPSADS
LDGRVHLTVANLNDKFHRASEAPTTEALLKAIFPDAQRFAVHGALPQVSLFGDEGAANHN
RLGGDYGAPGVQLFIYGRQQGGEDNPQRYPARQTLEASQAVARLNQVNPRQVIFARQNPA
VIDKGVFHNDVIAVSNQQVLFCHEQAFVDQPQLLQQLAQQVPGFTPLVVPASQVSVEDAV
ATYLFNSQLLSKREGGMRLILPLEAQEHPGVWRYLNRLVEGDNPIDELQVYDLRESMANG
GGPACLRLRVVLTEDERQAVNPAVMMNDALFATLNDWVGRYYRDRLTQADLADPQLLREG
REALDRLTQILRLGSVYPFQQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory