PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS13985 (1201 amino acids)

SeqID: BWI76_RS13985 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS13985
MFDTLLIANRGAIACRILRTLRAMQVKGVAVYSEADLSSLHIRDADEALSLGDGPAAQTY
LATEKIIAAAQQSGARAIHPGYGFLSENAAFAEACEAAGLAFVGPTPRQLRVFGLKHTAR
ALAKAEGVPLLEGSELLADSDEACRAAEAVGYPVMLKSTAGGGGIGMRVCRDARELTEAF
ATVQRLGQNNFSDAGVFLEKYIERARHLEVQIFGDGRGDVIALGVRDCSVQRRNQKVIEE
TPAPNLPEGTAQALCAAAIALGKAVSYRSAGTVEFVYDSTARQFYFLEVNTRLQVEHGVT
EQVWGVDLVRWMIELAAGDLPPLDVLAAGLRPQGHAIQARLYAEDPGRQFQPSPGLLTEA
IFPPADGAALRIDRWVEAGCEVPPFFDPMLAKTIAWRPSRDEAIAGLAQALAETRLYGVE
TNRLYLLQILGFAPFTEGEPWTRCLEQLRYRAATVEVLSAGTQTSVQDYPGRLGYWAVGV
PPSGPMDDRALRLGNRLLGNAEGEAALEITLNGPTLKFNTDVQAVVCGAPLAVTLDGVDQ
PLDRVFTIPAGATLKLGAINGAGVRSYLCLSGGIQVPDYLGSKSTFTLGQFGGHGGRALR
GGDVLHLAPRAAARVGDQLPAALRTALAQVRTLRVIYGPHGAPEFFTPAYIATFFATDWE
VHFNSSRTGVRLIGPKPLWARDSGGEAGLHPSNIHDNPYAVGAVDFTGDMPVILGPDGPS
LGGFVCPVTVIEADLWQLGQLKAGDKVRFVAVDLPTARRLAQGRRAELTTLSHQAIAWQP
APLTSPVVMTCGEADKRLVARLSGDTHLLLEAGEPELDLVLRFRIHALMQALEAQSAEGV
IDITPGIRSLQIHFQPETLPLETLLARVRGEWSTVCLSDDLQVPTRVVYLPLSWDDPACR
KAIDKYMTTVRQDAPWCPSNLEFIRRINDLPDEQAVWNTVFDASYLVMGLGDVYLGAPVA
TPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFVGRTLQMWNRYHDV
ADFAGKPWLLRFFDQLRFYPVSAEELLQIRRDFPLGRYPLRIENSTLRLAEYQQFLHREA
HSIGAFREHQQRAFNAERDRWIASGQAHFDSQEGAVDEGGDAPLRQGEQGVESPISGNLW
QVQTAAGSRVRAGDVLVVLESMKMEIPLLAPCDGVIQQVHVQPGSAVRAGQRVAVIIEEK
A

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory