PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS14855 (317 amino acids)

SeqID: BWI76_RS14855 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141669: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.58
    CytoplasmicMembrane    3.41
    Extracellular          0.01
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS14855
MTKLRKAWLAIAVAAVITTMTGLAPAASAAPQESKKIARIGLMVQDMSNPFFSAMERNAK
QAAAKIGATLNVQDAQVDLANQNTQIDAFIQQKVDLIIISAVDESGIEPAIQRAKAAGII
VIAVDTPAKGADAAIMTNAIQAGETSCEYLFSQMGGKGKVLLVDGTPIQTIIDRIKGCKN
VAQKYPDIKIVGQQASRNDRASGLMVTTDMLTANPDVSGIFGMNDPSALGAVLAVEQAGK
AGAINVTGVDGSPEAVEELKRGGSPFIGTATQNPGEMVRQAISLAQDMVDGKPIASRTVL
IPSVLVTRDNVGSYPGW