PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS15025 (268 amino acids)

SeqID: BWI76_RS15025 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 128372: Lipoprotein 28 precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS15025
MKYAAFKLAGVALSLSLAWTSAQAAALRVAADPVPHAEILNYIKKIDPSLDLKIVELTSG
VNANELLANGDVDANYFQHVPYLKDQEKALGKTFAVAATVHIEPLGIYSRKHKDFKSLPE
NATVAVPNNTTNLSRALFLLQNQGLIKLAAKFTDPATTLATPKDIVENPKHLKILEIESP
QIPRSLDDVDLAVINGNYALEAGLVPAKDALGLESATNNPYANILVTTPALANDPRIKAL
AKDLTSPQVAEFIRKQYNGSVIPVAPQS