PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16110 (501 amino acids)

SeqID: BWI76_RS16110 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2507181: Putative tartrate carrier]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16110
MKEKQTTIPPAGAAKNAAYKRLLMMAMPIIVAVLLLFVPVPEGLPPYAWHYFAIFVGVIV
GLIFEPLPGAVIGITGVVVIALCSQWLLFSPEQLAAPNFKLAGASFKWAVSGFGNSTVWL
IFGAFMFAAGYDKTQFGRRLALILVKYLGRRSLTLGYAITFADLLLAPFTPSNTARSGGT
IYPIIANLPPLYGSKPNDPSARRIGSYLMWVAITAACITSSMFLSALAPNLLALALVKSI
VGINISWGTWFIAFLPLGILLILTMPLLAYWFYPPEVKVNDEVPLWAARELEKLGRLSRN
EILLLVFVCFALMMWIFAAEWIEPALAALLVIVLMLWTGVLSWNDITSNKAAWNTFAWFA
TLVALADGLSSTGFIAWLGKEGGALMSGISPGVATVVLLLAFYLLHYLFASTTAHTTALL
PAMLTIASTIPGMNMQVFVLLMVTSLGVMGIITPYGTGPSPIYYGSGYLPTKDYWRLGTI
FGAIFLAALLLIGYPWMSMMF