PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16270 (466 amino acids)

SeqID: BWI76_RS16270 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 120601: Fumarate hydratase class II]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16270
MTTYRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPVELIHALALTKRAAAKVNN
DLGLLAAEKAQAIIQAADEVLAGQHPDAFPLAIWQTGSGTQSNMNMNEVLANRASELLGG
ARGMERKVHPNDDVNKSQSSNDVFPTAMHVAAIIALREKLIPQLNVLKQTLNDKAVAFSD
IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIDHSLPHLAELALGGTAVGTGLNTHP
QYAVRVAAELAALSGQPFVTAPNKFEALATVDALVHAHGALKGLAASLMKIANDVRWLAS
GPRCGIGEIAIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAVNIGGASGNFELNV
YRPLVIHNFLQSVRLLAEGMASFNEHCAVGIEPNRERISQLLNESLMLVTALNTHIGYDK
AAEIAKKAHKEGLTLKASALALGYLTEDEFDRWVRPQEMVGSLPTR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory