PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16275 (548 amino acids)

SeqID: BWI76_RS16275 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599529: probable fumarase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16275
MSNKPFVYQDPFPLKKDDTEYYLLSSDYVSVAEFAGQEVLKVEPQALTLLAQHAFHDASF
MLRPAHQQQVADILNDPEASENDKYVALQFLRNSDIAAKGVLPTCQDTGTAIITGKKGQR
VWTGGGDEAALAQGVYNTYIQDNLRYSQNAPLDMYKEVNTGTNLPAQIDLYATDGEEYKF
LCIAKGGGSANKTYLYQETKALITPAKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAES
TLKTVKLASTKYYDGLPTEGNEHGQAFRDIQLEQELLAEAQNLGLGAQFGGKYFAHDIRV
IRLPRHGASCPVGMGVSCSADRNIKAKINREGIWLEKLESNPGKYIPEHLRQAGEGEAVK
VNLNQPMSDILALLSQYPVSTRLSLSGTIIVARDIAHAKLKELIDSGEELPQYVKDHPIY
YAGPAKTPDGYASGSLGPTTAGRMDSYVDLLQSHGASMVMLAKGNRSQQVTDACHKHGGF
YLGSIGGPAAVLAQQSIRSLECVAYPELGMEAIWKIEVENFPAFILVDDKGNDFFQQIQS
SQCARCVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory