PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16775 (360 amino acids)

SeqID: BWI76_RS16775 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596449: probable L-malate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16775
MQTGHRFQATDLHQFVKTLFTHMGSSPTEASLIADHLIAANLAGHDSHGVGMIPSYVRSH
AQGYLQLNRHASVMKDAGAVVTLDGNGGFGQVVAHEAMQIGIEKAKQHGLAAVALRNAHH
IGRIGYWAEQCAAAGMISIHFVNVVGNVMVAPFRGKDSRFGTNPLCVVFPRVGHPPLLLD
YATSAIAFGKTRVAWHKGVPVPAGSLIDARGVPTTDPAVMQTSPLGALLTFAEHKGYALA
TLCEAIGGAVSGGKTSHQETLQGSVDAIFNCMTTIILSPEAFDAPDMQRETEAFIDWCKQ
SPHEPDAPILAPGEWEEANRRQRLAQGIPLDAGSWQAICAAAEEVGVPADTLAQLRQKLA