PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16940 (439 amino acids)

SeqID: BWI76_RS16940 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363492: D-galactonate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16940
MNSYSHNQTTAASASGARPSRRRIGILALLAVGTMINYLDRTVLGIAAPQLTAELGIDAA
MMGIVFSAFAWTYALAQIPGGIFLDRFGNKVTYFLALTLWSLFTLFHGMAVGLKSLLLCR
FGLGVSEAPCFPVNSRVVSAWFPQQERAKATAVYTVGEYLGLACFAPLLFWIMGSFGWRA
LFISVGAAGVLFALVWWRCYREPHEDKHLNQLEREHIINGGGMSTGAEQHTAFSWPLVRQ
LLAKRQILGASIGQFAGNTVLVFFLTWFPTYLATERHMPWIKVGFFAIMPFLAAAGGVMF
GGWVSDKLLKATGSANLGRKLPIIAGLLMASTIIAANWLTSDLAVILVMSFAFFGQGMVG
LGWTLISDIAPKGLGGLTGGLFNFCANLAGILTPLIIGFIVAASGNFFYALIYIGGAALL
GVAAYLFILGDVKRIELSQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory