PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS16945 (617 amino acids)

SeqID: BWI76_RS16945 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS16945
MLRSIATVSISGTLPEKLHAIAAAGYQGVEIFENDLLYYTGTPADIRHLAADLGLKITLF
QPFRDFEGASRSQFAANMERARRKFALMHELGCDTMLLCSNVQPDCSADVELQIADLRAL
AELAEQEQIRIGYEALAWGTHVNRWHQAWSRVKSVNSPALGIVLDSFHVLARGDTLQRLG
EVPPEKITFVQMADAPLMKMDILEWSRHFRCFPAQGQLPLVDFACDLTRCGYRGPWSLEI
FNDSFRASPNGATAKDGYRSLLWLEEQVRQRLPESRAPLFAPVELPLYAGLEFIEFAAAP
AQAGELGQRLAQLGFAEEGSHRSKRVSLWRNGGARVVVNAQPHSWADHFHQRHGVSLCAM
ALRVSQSAAIVERARAYGYATWQGDAGPNESPIPAVCAPDGSLIYLIEVGDDIYTRDFHL
RANLTPRDDYQGIDHLALGMEADSRDNWIIFFRSVFGFILEHEQTLPDPYGLVRSLAVRS
PQGDIRLALNISQSRATQIARSVACYQGAGLQHAAFACRDLPATLASLPQIAVEALPIPA
NYYDDLLARFGEDAQVNLLKNHQILYDCDGDGGEFLHLYTRPFSAGRFFFELTERRNGYA
LYGAVNAAVRLSAMQYT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory