PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS17240 (543 amino acids)

SeqID: BWI76_RS17240 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01040: SBP_BACTERIAL_5 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141676: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS17240
MTIITKKSLVAAGVLSALMTINAAVAADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGV
PESNINRDLFEGLLVSDLDGHPVAGVAEKWDNKDFKVWTFHLRKDAKWSDGTPVTAQDFV
YSWQRLADPKTASPYASYLQYGHLANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVPY
FYKLLVHPSVSPVPKSAIEKFGDKWTQPANIVSNGAYKLKDWVVNERIVLERNTNYWDNA
KTVINQVTFLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPKEVHVDPYLCTYY
YEINNQKAPFTDVRVRTALKMALDRDIIVNKVKNQGDLPAYSYTPPYTDGMKLIEPEWFK
WSQEKRNEEAKKLLAEAGYSADKPLTFNLLYNTSDLHKKLAIAVASIWKKNLGVNVKLEN
QEWKTFLDNRHQGTFDIARAGWCADYNEPTSFLNTMLSDSSNNTSHYKSPAFDKIIAETL
KTSDEGKRADLYAQSEQQLDKDSVIVPVFYYVNARLVKPWVGGYTGKDPLDNTYTRNMYI
VKH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory