PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS19735 (376 amino acids)

SeqID: BWI76_RS19735 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 66774166: Multiphosphoryl transfer protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS19735
MFQLSVQDIHPGQQAGNKEEAIRQVASALVSAGNVADGYVNGMLAREQQTSTFLGNGIAI
PHGTTDTRDQVLKTGVQVYQFPQGVTWGEGQTAYVAIGIAASSDEHLGLLRQLTHVLSDD
SVAEQLKSATTAEELRALLMGEKQSEALKLDNETLTLDVAASDLLTLQALNAARLKEAGA
VDASFVSRTINDKPLNLGQGIWLNDSTEGNLRSAVAVSRAANAFTSDEQPVSLLITVAMA
DDQPTAVLNRLSNLLLDKKADRLLKADGATLLALLTSDDAIAEDVLSAEYVIRNEHGLHA
RPGTMLVNTIKQFSSDITVTNLDGSGKPANGRSLMKVVALGVKKGHRLRFTAQGEDAQQA
LDAIGEAIAAGLGEGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory