PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS20460 (436 amino acids)

SeqID: BWI76_RS20460 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1174677: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS20460
MSQALPLVTRQGDRIAIVSGLRTPFARQATAFHGVPAVDLGKLVVGEMLARSTIPADIIE
QLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESLMAGTIRA
GIAGGADSSSVLPIGVSKKLARTLVDANKARTLGQRLKLFSRLRFRDLLPVPPAVAEYST
GLRMGDTAEQMAKTWGITRERQDALALRSHQLAAKAWEEGKLSAEVMTAYTPPFREPLEQ
DNNIRKNSTLADYQKLRPAFDRQHGSVTAANSTPLTDGAAAVILMTESRAKELGLVPLGY
LRSYAFTAIDVRQDMLLGPAWSTPLALERAGLTLADLTLIDMHEAFAAQTLANLHCMASD
RFAREVLGRSQAIGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVT
ACAAGGLGSAMVLEAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory