PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS22220 (325 amino acids)

SeqID: BWI76_RS22220 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3915813: Glucitol/sorbitol-specific phosphotransferase enzyme IIB component]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS22220
MTRIRIEKGAGGWGGPLELDAVADKKIVYITAGTRPAIVDKIARLTGWQAVDGFKEGEPP
EAEIGVAIIDCGGTLRCGIYPKRRIPTINIHATGKSGPLAQYIVEDIYVSGVKEENIFAL
EEGHSPAPQAAPAQPAARDYDTSKKITEQSDGLLAKVGMGMGSVVAVLFQAGRDTIDTVL
KTILPFMAFVSALIGIIMASGIGDWIAHGLAPLASHPLGLVTLALICSFPLLSPFLGPGA
VIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPVGLSLAEARQDTVRVGVPS
VLVSRFLTGAPTVLIAWFVSGFIYQ