PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS22395 (423 amino acids)

SeqID: BWI76_RS22395 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2507269: N,N'-diacetylchitobiose permease IIC component]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS22395
MNIQLMNVAVDIIEQRLAPLANVLTRNNHITAMRDSFALAMPFVIVGSLLVPILFPPVSI
DGASFFGQFYFQLRPILLPTFELTIGLVALIVAFGASASLAKQYRLPERLCGLTGCLAFL
LFIGFRGNGAANLYLGGMGIFTALISSTYSIEIVRFFYKKGWCIRLPEEVPVMTRNGFQL
LIPLLVVMLSISVINALLLQSTGRILPELISEAVRPLVVASDTLTAVLISLFICNLLWFV
GIHGALIITGIMNPFWMTYLFENQQALAAGSATLPHIYLQGFWDFYLLIGGIGSTLPLVF
MAMRSRSRQLKSVGKIGLLPSLFNINEPILFGFPIIMNPVFLLPFLFVPLINACIAWYLT
QLGILDRAVAMLPWSMPAPLGAAWSANGSWKNLCMCLFAIFNAWMLYRPFFKVYERQLAD
AER

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory