PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS23685 (444 amino acids)

SeqID: BWI76_RS23685 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 120593: L-fucose-proton symporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS23685
MSTLITDKVDKAAVHNEKLDTSAYLPHTPWLQFLLVCCLFALWGMAGNLNDILIAQFKKG
FDLTDTQTALVQSIFFLGYFFVALPAAALIKRYSYKAAIIIGLCLYALGCFLFVPAAQIM
TYGAFLACLGVIACGLSFLETSANTYSSLLGPIQSSTQRINFSQIFNSLGVISGVLIGQV
MVFGENDPSHEQLLAMPAAAADAARHQMVGQVVGPYLIIGSVLVVLALVFVFIKFPSCKG
TPSQQQQIPTESMGSTLKRLFAIPRFRLGILSQFLYVGAQVGVWSFTIRFVQLVQQGTSE
HSATYWLLASLVIYAVGKTVATWLMNRLNPALLLGTFALAATVLLLIAVFSSSMLAVYAL
ILVSFCMAPCWPTNFGLVIKGMGKDTQTAGSIVVMSIIGGAVIPLVMGIISDMNGGNMQI
AFIAPLLCFVYVAFYGFWCVRKGV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory