PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS24820 (381 amino acids)

SeqID: BWI76_RS24820 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596249: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS24820
MKIVIAPDSYKESLSATEVAQAIEKGFREIFPDALYVKVPLADGGEGTVEAMIAATQGTE
MSACVTGPLGVPVDACWGLSGDGKTAFIEMAAASGLGLVPPAQRNPLLTTSRGTGELILH
ALDHGAKNIIIGIGGSATNDGGAGMVQALGARLCDANGAEIGHGGGSLGGLNSIDITGLD
ARLHDCAIRVACDVTNPLIGDTGASRIFGPQKGATEAMIRELDSNLAHYADVIKADLHVD
VKQVAGAGAAGGMGAALMAFLNAELRSGIEIVTQALNLEEHILDCSLVVTGEGRLDSQSI
NGKVPVGVASVAKKYHKPVIGIAGSLTRDVGVVHQYGIDAVFSVLTSVTTLEEAFRGAAD
NIYRASRNIAATLQVGMATEG