PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS24890 (457 amino acids)

SeqID: BWI76_RS24890 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2507272: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS24890
MFSEIMRYILDLGPTVMLPIVIIIFSKILGMKLGDCFKSGLHIGIGFVGIGLVIGLMLDS
IGPAAKAMAEHFQINLHVIDIGWPGSSPMTWASQIALVAIPIAIAVNIFMLVTRMTRVVN
VDIWNIWHMTFTGAMLHIATGSYWIGILGVVVHAAFVYKLGDWFAKDTRDFFGLEGIAIP
HGSSAYLGPIAVLVDTIIEKIPGLNRIHFSADDIQKRFGPFGEPVTVGFVMGLVIGALAG
YDLKGILQLAVKTAAVMLLMPRVIKPIMDGLNPIAKQARKRLQAKFGGQDFLIGLDPALL
LGHTSVVSASLIFIPLSILIAVLVPGNQVLPFGDLATIGFFVAMAVAVHQGNLFRTLISG
IILMGITLWIATQTIGLHTQLAANAGALKAGGLVASMDQGGSPITWLLIQLFTWQNVVGF
AVIGVIYVAGVLLTWRRARNFAAAEKAATAQQSPSIS