PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS25550 (483 amino acids)

SeqID: BWI76_RS25550 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1172008: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS25550
MQFEIIVVLLVYLLVVFGLSIYAMRKRSSGSFLSEYFLGSRSMGGFVLAMTLTATYISAS
SFIGGPGAAYKYGLGWVLLAMIQVPTIWLSLGILGKKFAILARRYNAITLNDMLQARYQS
RAVVWIASVSLLVAFVGAIAVQFIGGARLLETAAGIKYETGLLIFGITIALYTAFGGFRA
SVLNDTMQGMVMLIGTIVLLVGVVHAAGGLHNAVDTLQHIDPKLVSPHGANDILTPAFMT
SFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIGTIVVAILMFGMHLAGALGRAVLPH
LTVPDQVIPTLMVQVLPPWAAGLFLAAPMAAIMSNVNAHLLQASATIIKDLWLSAQPTKK
HNEQKLKRISTIATLVLGILMMLAAWRPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWERA
NATGALSAMIVGGVLYAILATFNLQYLGFHPIVPSLLLSLLAFLVGNRFGTSAPQAAVLT
TDK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory