Running PSORTb v3.0 on BWI76_RS26340 FitnessBrowser__Koxy:BWI76_RS26340 (426 amino acids)
SeqID: BWI76_RS26340 FitnessBrowser__Koxy:BWI76_RS26340 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- CytoplasmicMembrane [11 internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 79076: Cytoplasmic membrane integral membrane protein] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 10.00 Cytoplasmic 0.00 Periplasmic 0.00 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: CytoplasmicMembrane 10.00 -------------------------------------------------------------------------------
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Predict transmembrane helices and signal peptides: Phobius
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>BWI76_RS26340 FitnessBrowser__Koxy:BWI76_RS26340 MKPMHFAMALLSAVMFFILAGVFMGVQLELDGTKLVVDTAADIRWQWIYIGTAVVFFFQL LRPVFQKTIKNVSGPKFILPAIDGSTVKQKLFLIALLVIAVAWPFMVSRGTVDIATLTMI YIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGF LLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRSAR EGGWDTFSNFFGVKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIA CRSLGLSPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMG SQFAVILAAVLLVVSRELMRDFNEYSMLMLGALMVLMMIWRPQGLLPMTRPQLKLKNGQA KEGEQA
Lawrence Berkeley National Laboratory