PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS27815 (562 amino acids)

SeqID: BWI76_RS27815 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS27815
MASSGTTSEKMRFTGAQLVVHLLERQGITTVSGIPGGSILPIYDALSQSTQIRHILARHE
QGAGFIAQGMARTEGKPAVCMACSGPGATNLITAIADARLDSIPLVCITGQVPASMIGTD
AFQEVDTYGISIPITKHNYLVRNIAELPQVMSDAFRIAQSGRPGPVWIDIPKDVQAATIE
LDALPEPGARMAAPEFDSASVREAAAMINAAQRPVLYLGGGVINAPEHIRQLAEKANLPT
TQTLMALGMLPKAHPLSLGMLGMHGARSTNFILQEADLLVVLGARFDDRAIGKTEQFCPN
AKIIHVDIDRSELGKIKQAHVAIQGDVGEVLEQLIPQVEAQPRSAWLQLVADLQREFPCT
IPQEQDPLSHYGLINAVAACVDDEAIVTTDVGQHQMWVAQAYPLNRPRQWLTSGGLGTMG
FGLPAAVGAALANPQRKVICFSGDGSLMMNIQEMATAAENQLDVKIILMNNEALGLVYQQ
QSLFYKQGVFAATYPGMVNFMQIASGFGLQTCDLNNEADPQAALQAIIDRPGPALIHVRI
DAEEKVYPMVPPGAANTEMVGE