PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS01125 (429 amino acids)

SeqID: CA265_RS01125 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 732052: Gnt-II system L-idonate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS01125
MSLFILLFGILLLFVLILKKINPMIALIAVAIITGLLLGMPATKVMASISNGIGSTLGSM
VMVLALGAMMGKLIEDSGSAKKIVFILIGAFGKKNIQWAVLLTGLLVGIPLFYNAGFVVL
IPLVFAISATTGLSKLYIGIPMATALSVTHGFLPPHPGPVALAGIFHADIGKTLIYGLTL
SVPIAVIAGIYFPRLILKRDQSVTVQHFSISEEENLPSASRSFITALLPVFLIIAGTIGS
SFKIDYICKPLFIFLADPTAALLISVIIALVVQKTSITKAMESCAEGVKSIAMIILIIAA
GGAFKQILIDSGMGETVKQLTGGLNLSPLLLAWLITASLRVTLGSATVAALTASGMVLPL
IGPGTPPELMVLSVGAGSLMFSHVNDTGFWMFKEYFNLSLKETFRTWTMMESLVSVLGLV
GVLVLNQFV