PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS02350 (739 amino acids)

SeqID: CA265_RS02350 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS02350
MSNTSKIIYTKTDEAPMLATYSLLPIVQAFTASAGIDVETRDISLAGRILANFPEYLKDD
QKIGDALAELGALATTPEANIIKLPNISASIPQLVGAITELQSQGFAIPNYPDNAQSDEE
KAIKAKYAKVLGSAVNPVLREGNSDRRAPKAVKNYAKQNPHSMGKWSADSKTKVASMTEG
DFYGSEKSTTVAEASQFKIEFVAADGTVTELKGLSPLKAGEVIDSSALSLSALKTFVAKE
IAEAKAAGVLLSAHLKATMMKVSDPIIFGAIVEVYFADVFTKYADLFKELNIDTRNGLGD
VYAKIAGNAKQAEVEAALAQAIENGPALAMVNSDKGITNLHVPSDVIVDASMPAMIRTSG
QMWNAAGKAQDTIALIPDRSYAGVYTATIDDCKANGAFDVTTIGSVPNVGLMAQKAEEYG
SHDKTFQATGSGTIRVTDADGKVFFDQKVEKGDIFRMCQTKDAPIQDWVKLAVNRSRLSE
TPAVFWLDENRAHDREIITKVNTYLKDHDTTGLDIRILAPIEATKFTLERIRKGLDTISV
TGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHIEQFIDEGYLRW
DSLGEFLALQASLEHLSQTQNNTKAQVLADALDEANAKFLATDKSPGRKLGTIDNRGSHF
YLALYWAEALAAQTKDADLQARFAPLAKTLFANEAKINEELIGAQGKPQNIGGYYNPNDE
LASKAMRPSETLNTSLASL