PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS02630 (706 amino acids)

SeqID: CA265_RS02630 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708001: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS02630
MSIDTKSYKHVSYLWDEEEAAKLAGDEVALLIYRSNLLGADLRLTNYGGGNTSCKVLEKD
PLTGLETEVMWVKGSGGDLGTLKKSGLAALYVDRLRSLKNIYRGVEHEDEMVELFNHCIF
DLSSKAPSIDTPLHGFLPFAHIDHLHPDAAIAIAAAKDGKKITEELFGGTIGWVEWKKPG
FELGLQLKQCLDENPGIRGIMLGSHGLFTWGDTAYESYLNTLEVIEICSDYLNQNYGKKG
PVFGGQKIESAAADQRKKQAAALAPVLRGLCSSKQHMIGHFTDDARVLEFINSNDLDRLA
PMGTSCPDHFLRTKISPLVLTLTSDADLSDVKALKETLEPAFEAYRAMYTAYYEACKHPN
SPAIRDTNPVVILYPGIGMFTFSKDKQTARVAAEFYINAINVMKGAEAVSAYTSLPHQEA
FNIEYWLLEEAKLQRMPKPKPLTGKIALITGSAGGIGKAIAKKFVAEGGVVILNDMNAER
LEEAAKEFAGLFGKDSYSTAVLNVTSEEDIKQAFDSAALAFGGVDIIVNNAGLSISKTIA
DHTEKDWDLLYDVLVKGQFFITQAATNTMQKQDIGGDIINIVSKNALVSGPNNAGYGSAK
AAQLHLSRLNAAELGADNIRVNVVNPDAVISDSNIWAGGWAEGRAKAYGITVAELPAYYA
KRTLLNQIILPDDIANACFAFVGGLLHKSTGNVLNVDGGVAMAFVR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory